I'm just start having this issue today, EoF doesn't change the notes to the new tuning (Standard B) and it still displays them on Standard E. This is wierd considering that it did change the notes before in a previous project with Standard C# tuning.     Also, in another project, EoF doesn't recognize the Drop C tuning and displays it as "Unknown tuning". Even the Power Chords on the 6th string are charted as "7sus4" like on Standard E again.

So the other night I Finished syncing the BASS for PRIMUS - Here Come The Bastards...   BUT There was a bug and my ".psarc" file ended up with the notes from the 1st save i did about 1 minute into starting... SO... my time has been wasted and i am Sad-Faced to the Max right now... Not sure why it didn't successfully save... :(