@raynebc @cozy1 Thanks, Guys
The problem was solved by going to the EOF's Ver. 1.8RC12 5-23-2017 - import/export preferences and disabling the "Abridged Rocksmith 2 export", re-saving the EOF projects (Customs) and then using the new XML files when repacking with the toolkit. Like raynebc suggested. I new it had to be a real simple thing causing the problem, but frustrating when a simple mis-setting drives you crazy for a few days. Luckily if someone else see's this problem show up here's the cure. I also installed the Toolkit 126.96.36.199 (rev 3d133c61), which is fantastic. Thanks for all the extra new features in it. All is good again.